My recipe for keto pumpkin streusel cupcakes is sure to be your cupcake of choice all pumpkin season long. It's moist, tender, and packed with fall flavors.
As far as I am concerned, you just can't have too many low-carb pumpkin treats during pumpkin season.
If you're both a fan of pumpkin and coffee cake, then these low-carb pumpkin streusel cupcakes are for you.
Be sure to also check out our keto pumpkin recipes and our collection of keto coffee cakes for more delicious options!
These keto-friendly pumpkin streusel muffins feature the best of pumpkin flavor and a delectable topping in one tasty treat.
Not only is each cupcake packed with pumpkin spice goodness, but they're a breeze to make. Winning!
Having a keto cupcake is an automatic way to ensure portion control. This makes these a smart choice while counting your keto macros.
Moreover, these pumpkin cupcakes are low-carb, gluten-free, grain-free, sugar-free, and keto-friendly. I mean, what's not to love?
Low-Carb Pumpkin Streusel Cupcakes

One bite of these cupcakes, and you will have to agree that eating this way can be a delicious breeze.
I am a firm believer that with the right keto-friendly recipes, you can master a ketogenic diet and reap the benefits of reducing your carbs and entering into a state of ketosis.
What's neat about these pumpkin streusel muffins is that they can be enjoyed any time of day.
Have them as a meal for a quick breakfast, dessert, or when you need a little snack to tie you over before your next meal.
Ingredients Needed
Keto Pumpkin Streusel Cupcake Batter
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The following are the ingredients needed to make this recipe. Note the full printable recipe card is at the bottom of the page.
- Finely milled almond flour
- Coconut flour
- Baking powder
- Cinnamon powder
- Pumpkin spice
- Psyllium husk powder
- Salt
- Ground ginger
- Unsalted butter softened
- Granulated sugar substitute
- Large eggs, room temperature
- Vanilla extract
- Pumpkin puree
Keto Streusel Topping
- Almond flour (I used finely milled)
- Coconut flour
- Granulated sugar substitute
- Cold butter sliced thinly
- Cinnamon powder
- Pumpkin spice
- Salt
- Finely chopped pecans (optional)

Why not make two batches and freeze one? While one is in the oven, you can make the other. This way, you are armed and ready to face pumpkin season.
Freezing these cupcakes is a great way to plan your snacks or meals. I usually let mine defrost overnight in the refrigerator, but I've also let it sit on the counter, and in less than an hour, they are ready to eat.
My recipe for keto pumpkin cupcakes features a streusel topping because this girl thinks the best part about a coffee cake is the yummy streusel crumb. Who's with me on this?
How To Make These Pumpkin Streusel Cupcakes

These pumpkin cupcakes are made with a combination of both super-fine almond flour and coconut flour.
The almond flour needs a blanched variety because you won't get the same results with an almond meal. Substituting for almond meal will result in a very dense cupcake.
In addition to the almond flour, it uses some coconut flour to help absorb some of the moisture from the pumpkin puree so that it's not soggy.
I've also added a tablespoon of psyllium husk powder, which is simply fiber.
That little bit of extra fiber gives them the perfect crumb texture, and it helps in maintaining the structure of these cupcakes.
Plus, the psyllium husk powder makes this a delicious way to add more fiber to your keto diet. Winning!

Sugar-Substitute Options
I have a few sugar substitutes for you to choose from when it comes to these low-carb pumpkin muffins.
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Hands down, my favorite sweetener of choice is Lakanto Monk Fruit. I truly love both the flavor and texture it has and the fact that it measures 1:1 for sugar, which makes it a breeze when converting recipes into keto-friendly options.
This brand combines monk fruit and erythritol for a great blend.
In case you don't know, Lakanto gets its sweetness from antioxidants called mogrosides, instead of fructose or sucrose.
That's why it's a great all-natural sugar substitute and has zero calories and a zero glycemic index.
I'm also partial to the brand Swerve, which is also an erythritol blend. Unlike other natural sweeteners like stevia, it has no bitter aftertaste and measures just like sugar.
Swerve is made from ingredients found in select fruits and starchy root vegetables and contains no artificial ingredients, preservatives, or flavors. What's more, it also has a 0% impact on blood sugar.
You could also use the stevia and erythritol-based brand Pyure for this cranberry coffee cake. But if using Pyure, you will want to use half the amount called for in this recipe since it's a much sweeter option.
Lastly, if you can't easily find a more natural sugar substitute, you can also use Splenda with great success. Keep in mind that the Splenda to use is one that has a bulking agent.
It's the one that comes in larger bags. I don't recommend Splenda Bake because it's actually a half-sugar and half-sucralose product and will be too high in carbs to be considered keto-friendly.
Frequently Asked Questions
The following are some questions I've been asked about this recipe, and so I thought I would address them below.
Is pumpkin keto-friendly? Yes, in fact, many people who are doing keto enjoy pumpkin recipes. Keep in mind that the amount of pumpkin puree used is spread out throughout the entire recipe and, therefore, makes it doable.
And don't make the mistake of using pumpkin pie filling since it's pre-sweetened and therefore loaded with sugar.
Can you make these low-carb pumpkin cupcakes without the streusel topping? Sure, you can. However, I don't know why you would deprive yourself of the keto streusel topping. Since it's totally low in carbs and keto-friendly, LOL, just saying.
Is it possible to use less streusel topping on these cupcakes? Of course, you can. Just use half of the ingredients in the streusel recipe. I won't judge you for this. I promise.
Can you make these pumpkin cupcakes with coconut flour alone? Well, not this recipe, but you can use my recipe for Keto Streusel Coconut Flour Coffee Cake, and this way you can enjoy a pumpkin cupcake that is also nut-free.
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Keto Pumpkin Streusel Cupcakes (Gluten-Free)
This recipe for keto pumpkin streusel cupcakes is sure to be your cupcake of choice all pumpkin season long. It's moist, tender and packed with fall flavors, plus easy to make.
Ingredients
Keto Pumpkin Streusel Cupcake Batter
- 2 cups finely milled almond flour
- ¼ cup of coconut flour
- 1 tablespoons baking powder
- 3 tablespoons cinnamon powder
- 1 tablespoon of pumpkin spice
- 1 tablespoon of psyllium husk powder
- ¼ teaspoon salt
- 1 teaspoon of ground ginger
- 1 cup unsalted butter softened
- 1 ¾ cup granulated sugar substitute
- 3 large eggs, room temperature
- 1 teaspoon vanilla extract
- 1 cup pumpkin puree
Keto Streusel Topping
- ¾ cup of almond flour (I used finely milled)
- ¼ cup of coconut flour
- ⅓ cup of sugar substitute
- ½ cup cold butter sliced thinly
- 1 teaspoons of ground cinnamon
- 1 teaspoon of pumpkin spice
- ¼ teaspoon of sea salt
- ¼ cup of finely chopped pecans (optional)
Instructions
- Preheat oven to 350 degrees.
- Line your muffin pans with 20 cupcake liners.
- Make your streusel topping: In a small bowl, combine the sugar substitute, almond flour, coconut flour, salt, cinnamon, and pumpkin spice. To the dry ingredients add the thinly sliced cold butter and cut in the butter until the mixture resembles coarse crumbs. If you choose to add the pecans stir them in at this time. Set aside.
- Make the cupcake batter: In a large mixing bowl, softened butter, sugar substitute until light and fluffy. To this mixture add the eggs one at a time being sure to mix well.
- Next, add the pumpkin puree. Mix until fully incorporated.
- Lastly add the almond flour, coconut flour, baking powder, psyllium husk powder, salt, and spices.
- Add the batter to the cupcake-lined muffin pans. Then, add one tablespoon of streusel topping per cupcake.
- Bake cupcakes for 20-25 minutes or until the crumbs are lightly browned and an inserted toothpick comes out clean.
- Store leftovers in the refrigerator in an airtight container for up to five days or freeze for up to three weeks.
Nutrition Information:
Yield: 20 Serving Size: 1Amount Per Serving: Calories: 210Total Fat: 20.7gSaturated Fat: 11.5gCholesterol: 45mgSodium: 6229mgCarbohydrates: 3.5gNet Carbohydrates: 2.4gFiber: 1.1gSugar: 0.7gProtein: 2.5g












Bonnie says
Delicious! I found that when I made it, there was a lot of batter left over after making the 16 cupcakes. I did make 18, and couldn't decide if I should make more cupcakes or fill the 18 I had made to the top of the tin. I did opt to do that. I also had a lot of streusel mix left over as well. However, it was delicious and I will make it again.
Hilda Solares says
Hi Bonnie! Cool that you were able to get more. Glad you enjoyed the recipe darling 😉
Shannon says
Is there a particular sugar sub you used? I have Splenda and stevia and would prefer to use the Splenda but it says it’s 2 g of carbs per half a tsp. Afraid the 1 3/4 cups of it may add up to a lot of carbs. Thanks!
Hilda Solares says
Hi Shannon, I personally like to use Swerve. But splenda should be ok. Are you sure you are not using the Splenda Bake? Because that's a combination of splenda and sugar. I made this mistake when I first began baking. It was so frustrating to see. Here is some information regarding Swerve and why it's my sweetener of choice: Swerve is the name brand of Erythritol it's unlike other sugar alcohols has a 0 % impact on blood sugar. (unlike Xylitol and Malitol) It is completely safe to eat on a keto diet and you do not need to count the carbs in your Net carb count for the day.
Erythritol is only 0.2 Calories per gram. It is listed as 25 grams of carbs by difference. In the US at least, anything that is not protein or fat when tested is automatically listed as a carb by difference. Erythritol is a sugar alcohol that is 90% processed in the small intestine. The human body cannot derive energy from erythritol (hence the low calorie count), and it has 0 glycemic impact and load (no insulin response). https://swervesweet.com/videos/swerve-and-carbohydrates
Shannon says
Oh thank you so much! I just realized the Splenda DOES say “mix of Splenda sweetened & sugar” so thank you for pointing that out. Thankfully I didn’t open it yet so, I will return it and look for some swerve because that sounds absolutely perfect! Thank you for your help, I really appreciate it. Looking forward to making these so I can stop eying the ones from Dunkin Donuts I can’t touch haha. I’ll be sure to leave my feedback afterwards!
Hilda Solares says
It's a little sneaking on their part but I'm glad I was able to assist you. Splenda does have one that doesn't include sugar, but you need to read the label carefully. The only downside of Swerve is that it's a little pricier. I hope this helps. Do leave us your feedback afterwards.;)
Brittany says
Do you put the streusel on top before baking?
PattySue says
These sound SO delicious! I also LOVE coffee cake. Wondering if you used mini cupcake pan or regular size to get 16.
Peace...
Hilda Solares says
Hi PattySue, This recipe actually make 16 regular sized cupcakes darling. You might want to also check this recipe. Enjoy in good health! https://www.fittoservegroup.com/2018/09/12/keto-pumpkin-streusel-coffee-cake/